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Biometry and Bioinformatics Team
Na skróty

Biometry and Bioinformatics Team

Leader

Prof. Paweł Krajewski

Staff

Prof. Zygmunt Kaczmarek
Aneta Sawikowska, PhD
Hanna Ćwiek-Kupczyńska, MSc Eng.
Maria Nuc, MSc (PhD student)
Monika Mokrzycka, MSc Eng.

 

The Team conducts research on modelling and analysis of data from biological experiments as well as data processing tools and structures. Of special interest are data obtained from sequencing or chromatography experiments. Due to numerous observations and complementarity of analyses in biological projects, the integration of various data sets plays a key role in our activities.

Research profile

  • Statistical, informatic and bioinformatic methods applicable in the analysis and integration of results of biological experiments, with special attention to experiments performed in genetics, genomics and plant breeding.
  • Database structures and tools for storage and processing of plant biology data.

Methods:

  • analysis of linear mixed models,
  •  functional data modeling,
  •  multivariate analysis,
  • relational databases,
  • standardization of experimental information,
  • analysis of DNA sequencing data,
  • interpretation and integration of data obtained by DNA sequencing

Current reserach activities

  • Methods of analysis and interpretation of results of experiments performed in gene expression, protein interaction and chromatin state studies (statutory research, EPITRAITS).

Selected papers

Grants

  • Project number: PBS3/A8/28/2015
Project title: SEGENMAS New generation sequencing and association mapping as methods for generating molecular markers of agricultural traits in narrow-leafed lupin
Coordinator: B. Wolko
Number of consortium partners: 6
Date: 1 March 2015 – 31 August 2018

 

  • Project number: 2016/21/W/ST6/02358
Project title: Semantic comparison of quantitative data sets
Project type: PRELUDIUM
Leader: H. Ćwiek-Kupczyńska
Date: 24 February 2017 - 23 February 2019

 

  • Project number: 2016/22/M/NZ9/00251
Project title: Regulation of semi-dwarf sdw1/denso gene expression in barley (Hordeum vulgare L.) and its association with plant architecture and physiology
Project type: HARMONIA
Leader: P. Krajewski
Date: 17 April 2017 - 16 April 2020

 

  • Project number: 7331013
Project title: European Plant Phenotyping Network 2020 (EPPN2020)
Project type: H2020-INFRAIA-2016-1
Coordinator: Francois Tardieu, INRA, Francja
Coordinator at IPG PAS: P. Krajewski
Date: 1 May 2017 - 30 April 2021

 

  • Project number: BIOSTRATEG3/343665/6/NCBR/2017
Project title: An integrated strategy for reactivating Polish breeding of hybrid wheat (Acronym: HYBRE)
Project coordinator: Stefan Malepszy (SGGW)
Coordinator at IPG PAS: P. Krajewski
Date: 21 August 2017 -  20 August 2020